Comparison between in situ dry matter degradation and in vitro gas production of tannin-containing leaves from four tree species

Dry matter (DM) degradation of Glycrrhiza glabra L, Arbutus andrachne, Juniperus communis, and Pistica lentiscus was determined using two different techniques: (i) the in vitro gas production and (ii) the in situ nylon bag degradability technique. Samples were incubated in situ and in vitro for 3, 6, 12, 24, 48, 72 and 96 h. In situ and in vitro DM degradation kinetics were described using the equation y = a + b (1 - e ct). At all incubation times except 3 and 72 h the cumulative gas production of J. communis was significantly lower than that of G. glabra, A. andrachne and P. lentiscus. At 3, 6 and 12 h incubation times the DM disappearance of J. communis was only significantly lower than that of P. lentiscus. At 24 and 48 h incubation times DM disappearance of J. communis was significantly lower than that of A. andrachne and P. lentiscus. There were significant relationships between in vitro gas production and in situ DM disappearance at 24 h and 96 h incubation times. The gas productions at 24 and 96 h incubation explained 51.2 and 52.4% of variation of DM disappearance, respectively. Gas production from the insoluble fraction (b) alone explained 66.4% of the variation of effective DM degradability (EDMD). The inclusion of gas production from quickly soluble fraction (a) and rate constant (c) of gas production in the regression equation did not improve the accuracy of predicting EDMD. It was concluded that in situ DM disappearance parameters of tannin-containing tree leaves such as used in this present study may be predicted from in vitro gas production parameters. South African Journal of Animal Science Vol. 34(4) 2004: 233-24

The effect of polyethylene glycol (PEG 8000) supplementation on in vitro gas production kinetics of leaves from tannin containing trees

The objective of this study was to determine the effect of inclusion of polyethylene glycol (PEG 8000) during in vitro incubation on gas production kinetics, organic matter digestibility (OMD) and the metabolisable energy (ME) content of foliage from the tannin containing tree species, Pistica lentiscus, Arbutus andrachne and Juniperus communis. The amount of gas produced when the foliage was incubated with buffered rumen fluid, was determined after 0, 3, 6, 12, 24, 48, 72 and 96 h of incubation in the presence of PEG at inclusions rates of 15, 30, 60 and 90 mg and in the absence of PEG. Their kinetics were described using the equation p = a + b (1-e-ct). Addition of PEG resulted in an increased gas production at almost all incubation times in all tree species. However species showed variable responses. After 3 h of incubation the PEG addition showed no significant effect on gas production when the foliage from A. andrachne was incubated, but had a significant effect on gas production as duration of incubation extended. The increase in gas production in response to increased levels of PEG inclusion was linear for P. lentiscus and J. communis. However, when the PEG inclusion rates exceeded 60 mg there was no significant increase in gas production when A. andrachne was incubated. The estimated parameters such as gas production rate(c) and gas production (a) from the immediately soluble fraction were not affected by the level PEG treatment, except that PEG addition at 90 mg had a significant effect on the gas production (a) from immediately soluble fraction of leaves of J. communis. Gas production (b) from the insoluble fraction (mL) and potential gas production (a+b), OMD and ME of tree leaves increased significantly with increasing levels of PEG addition. However, when PEG inclusion exceeded 60 mg these parameters showed no significant increase when leaves from A. andrachne were incubated. Although the mean increase in OMD per mg PEG supplementation was 0.131 digestibility units, the increase in ME per mg PEG supplementation was 0.0201 ME units. The elevated levels of gas produced, and increased OMD and ME estimates with the inclusion of PEG demonstrated the negative effect of tannins in foliage on digestibility. South African Journal of Animal Science Vol. 35(4) 2005: 229-23

Effect of cultivar and formaldehyde treatment of barley grain on rumen fermentation characteristics using in vitro gas production

The aim of this study was to determine the effects of cultivar and formaldehyde treatment of barley grains on rumen fermentation characteristics using the in vitro gas production technique. Amount of gas produced (mL/g organic matter (OM)) during fermentation was determined after 0, 3, 6, 12, 24, 48, 72 and 96 h of incubation in buffered rumen fluid. The gas production kinetics were described using the equation: y = A {1 – exp [- b (t-T) – c (√t - √T)]} where b and c are the initial gas production rate constant (h-1) and later gas production rate constant (h-1/2), respectively. Cultivar and formaldehyde treatment had significant effects on gas production kinetics. Total gas production (A) ranged from 389.9 to 410.8 (mL/g OM) with the cultivar, Esterel, producing the largest volume of gas of the cultivars. Due to low gas production rates at 3, 6 and 12 h of incubation the cultivars, Viva and Cecilla, took the longest to produce 50% of their total volume of gas. Formaldehyde treatment reduced the rate (μ) of gas production at 3, 6 and 12 h of incubation, and the total volume of gas (A), but increased the time (h) to produce 50% of A and reduced the time (h) to produce 95% of A. The reduction in gas production ranged from 33.3 to 51 mL/g OM with 6 h incubation showing the highest decrease in gas production. It is concluded that formaldehyde treatment may provide an opportunity to manipulate the site of digestion of barley grain in the digestive tract of ruminants. Through the selection of suitable cultivars and through formaldehyde treatment the nutritional and health problems associated with the fermentation of barley grain in the rumen could be reduced. Keywords: Barley cultivars; formaldehyde treatment; gas production kinetics South African Journal of Animal Sciences Vol. 35 (3) 2005: pp.206-21

Effect of heat treatment on in situ rumen degradability and in vitro gas production of full-fat soyabeans and soyabean meal

The objective of this study was to determine the effect of the heat treatment of full-fat soyabean (FFSB) and solvent extracted soyabean meal (SBM) on the in situ dry matter (DM) and protein degradability, and in vitro gas production kinetics of the protein sources. Ruminal disappearance of DM and crude protein (CP), and in vitro gas production were determined after 0, 4, 8, 16, 24, 48 and 72 h incubation using the in situ ruminal degradation and in vitro gas production techniques, respectively. In situ DM and CP disappearances were fitted to the exponential equation p = a + b (1-e-ct), where a is the rapid degradable fraction and b is the slow degradable fraction. In vitro gas production data were fitted to the equation, y = A {1 – exp [- b (t-T) – c (√t - √T)]}. Where b and c are the initial gas production rate constant (h-1) and later gas production rate constant (h-1/2), respectively. The two protein sources were heat treated both with steam pressure in an autoclave at 120 °C and in an oven at 150 °C for 20 min. Heat treatment had a significant effect on effective DM degradability (EDMD), effective CP degradability (ECPD) and in vitro gas production. Although the heat treatments reduced the EDMD, ECPD and the amount of gas produced, the results were inconsistent between protein sources. The heat treatments applied in the autoclave and the oven reduced the ECPD0.02 of FFSB by 12.5% and 10.9%, respectively. On the other hand, heat treatment applied through the autoclave decreased the ECPD0.02 of SBM by 13.9%, but by 18.7% when heat was applied through the oven. Heat treatment of SBM using the oven seemed to be more effective than using autoclaving. Heat treatments in the autoclave and oven reduced the total gas production from FFSB by 7.25 and 7.32%, respectively, and from SBM by 12.69 and 7.91%, respectively. It was concluded that heat treatment is an effective method of altering the rumen degradation characteristics of DM and CP in SBM and FFSB. Both methods could be used to increase the proportion of the rumen non-degradable protein fraction in protein sources which would then reach the small intestines unaffected by ruminal fermentation. Keywords: Full-fat soyabean; soyabean meal; heat treatment; in situ protein degradation; in vitro gas production South African Journal of Animal Sciences Vol. 35 (3) 2005: pp.186-19

Migratory corridors and foraging hotspots: Critical habitats identified for Mediterranean green turtles

This is the author accepted manuscript. The final version is available from Wiley via the DOI in this recordAim: Levels of sea turtle bycatch in the Mediterranean are thought to be unsustainable. We provide a comprehensive overview of adult green turtle (Chelonia mydas) distribution during nesting, migration and foraging phases, highlighting transitory as well as residential areas of high use to facilitate adequate protection for this long-lived, migratory species. Location: Mediterranean Sea. Methods: Thirty-four females were satellite tracked from breeding grounds in the four countries with major nesting (Cyprus, Turkey, Israel and Syria) for a total of 8521 (mean: 251) tracking days in a collaborative effort to summarize the most comprehensive set of distribution data thus far assembled for this species in the Mediterranean. Results: Ten foraging grounds are identified, with two major hotspots in Libya accounting for >50% of turtles tracked to conclusive endpoints. The coastlines of Egypt and Libya contain high densities of migrating turtles following the nesting season, particularly July-September, and likely also pre-nesting (April-June). A high-use seasonal pelagic corridor running south-west from Turkey and Cyprus to Egypt is also evident, used by >50% of all tracked turtles. Main conclusions: Bycatch levels and mortality rates for the key foraging areas and high-density seasonal pathways identified here are largely unknown and should be investigated as a priority. We recommend that the Gulf of Sirte in Libya be explored as a potential biodiversity hotspot and considered for proposal as a marine protected area (MPA). Green turtle fidelity to nesting beaches, foraging areas and migratory pathways renders them vulnerable to localized threats but enables targeted mitigation measures and protection

EPIdemiology of Surgery-Associated Acute Kidney Injury (EPIS-AKI) : Study protocol for a multicentre, observational trial

More than 300 million surgical procedures are performed each year. Acute kidney injury (AKI) is a common complication after major surgery and is associated with adverse short-term and long-term outcomes. However, there is a large variation in the incidence of reported AKI rates. The establishment of an accurate epidemiology of surgery-associated AKI is important for healthcare policy, quality initiatives, clinical trials, as well as for improving guidelines. The objective of the Epidemiology of Surgery-associated Acute Kidney Injury (EPIS-AKI) trial is to prospectively evaluate the epidemiology of AKI after major surgery using the latest Kidney Disease: Improving Global Outcomes (KDIGO) consensus definition of AKI. EPIS-AKI is an international prospective, observational, multicentre cohort study including 10 000 patients undergoing major surgery who are subsequently admitted to the ICU or a similar high dependency unit. The primary endpoint is the incidence of AKI within 72 hours after surgery according to the KDIGO criteria. Secondary endpoints include use of renal replacement therapy (RRT), mortality during ICU and hospital stay, length of ICU and hospital stay and major adverse kidney events (combined endpoint consisting of persistent renal dysfunction, RRT and mortality) at day 90. Further, we will evaluate preoperative and intraoperative risk factors affecting the incidence of postoperative AKI. In an add-on analysis, we will assess urinary biomarkers for early detection of AKI. EPIS-AKI has been approved by the leading Ethics Committee of the Medical Council North Rhine-Westphalia, of the Westphalian Wilhelms-University Münster and the corresponding Ethics Committee at each participating site. Results will be disseminated widely and published in peer-reviewed journals, presented at conferences and used to design further AKI-related trials. Trial registration number NCT04165369

Cancer Biomarker Discovery: The Entropic Hallmark

Background: It is a commonly accepted belief that cancer cells modify their transcriptional state during the progression of the disease. We propose that the progression of cancer cells towards malignant phenotypes can be efficiently tracked using high-throughput technologies that follow the gradual changes observed in the gene expression profiles by employing Shannon's mathematical theory of communication. Methods based on Information Theory can then quantify the divergence of cancer cells' transcriptional profiles from those of normally appearing cells of the originating tissues. The relevance of the proposed methods can be evaluated using microarray datasets available in the public domain but the method is in principle applicable to other high-throughput methods. Methodology/Principal Findings: Using melanoma and prostate cancer datasets we illustrate how it is possible to employ Shannon Entropy and the Jensen-Shannon divergence to trace the transcriptional changes progression of the disease. We establish how the variations of these two measures correlate with established biomarkers of cancer progression. The Information Theory measures allow us to identify novel biomarkers for both progressive and relatively more sudden transcriptional changes leading to malignant phenotypes. At the same time, the methodology was able to validate a large number of genes and processes that seem to be implicated in the progression of melanoma and prostate cancer. Conclusions/Significance: We thus present a quantitative guiding rule, a new unifying hallmark of cancer: the cancer cell's transcriptome changes lead to measurable observed transitions of Normalized Shannon Entropy values (as measured by high-throughput technologies). At the same time, tumor cells increment their divergence from the normal tissue profile increasing their disorder via creation of states that we might not directly measure. This unifying hallmark allows, via the the Jensen-Shannon divergence, to identify the arrow of time of the processes from the gene expression profiles, and helps to map the phenotypical and molecular hallmarks of specific cancer subtypes. The deep mathematical basis of the approach allows us to suggest that this principle is, hopefully, of general applicability for other diseases